50 lines
759 B
Plaintext
50 lines
759 B
Plaintext
#!/usr/bin/env nextflow
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process foo {
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publishDir 'foo', mode: 'copy'
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container 'debian:latest'
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output:
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path '*.fa'
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path 'hello.txt'
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path '*.{zip,html}'
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path '01_A(R{1,2}).fastq'
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path 'sample_(1 2).vcf'
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path '.alpha'
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script:
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'''
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echo A > hello.txt
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echo B > sample.zip
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echo C > sample.html
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echo D > 01_A\\(R1\\).fastq
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echo E > 01_A\\(R2\\).fastq
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echo F > sample_\\(1\\ 2\\).vcf
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echo 1 > f1.fa
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echo 2 > f2.fa
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echo 3 > f3.fa
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mkdir .alpha
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echo "Hello world!" > .alpha/hello.txt
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'''
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}
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process bar {
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debug true
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container 'debian:latest'
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input:
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path '*'
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script:
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'''
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cat .alpha/hello.txt
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[ `cat * | grep -c ''` == 9 ] || false
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'''
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}
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/*
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* main flow
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*/
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workflow {
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foo | mix | collect | bar
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}
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