24 lines
1.5 KiB
Plaintext
24 lines
1.5 KiB
Plaintext
set -e
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$NXF_RUN | tee stdout
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo1'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo2'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo3'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo4'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO1: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO2: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO3: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO4: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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## resume
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$NXF_RUN -resume | tee stdout
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > foo1'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > foo2'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > foo3'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > foo4'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO1: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO2: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO3: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false
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[[ `< stdout grep -F -c 'FOO4: file\ AA.txt; file1.txt file2.txt fil\ BB.txt'` == 1 ]] || false |