19 lines
430 B
Plaintext
19 lines
430 B
Plaintext
set -e
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# enable amazon plugin
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export NXF_PLUGINS_DEFAULT=nf-amazon
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# this test needs to validate the ability to access S3 public data
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# in anonymous manner, therefore make sure to clear any aws credentials
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unset AWS_ACCESS_KEY_ID
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unset AWS_SECRET_ACCESS_KEY
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unset AWS_SECRET_KEY
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unset AWS_ACCESS_KEY
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#
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# run normal mode
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#
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$NXF_RUN | tee stdout
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo'` == 1 ]] || false
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