31 lines
778 B
Bash
31 lines
778 B
Bash
#!/bin/bash
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BUCKET="nf-kms-xyz"
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PREFIX="work/ci-test/publish-s3/$(uuidgen)"
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OUTDIR="s3://$BUCKET/$PREFIX"
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function check_kms_key() {
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aws s3api head-object --bucket "$BUCKET" --key "$PREFIX/HELLO.tsv" | grep -c e5109f93-b42d-4c26-89ee-8b251029a41d
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}
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# Skip test if AWS keys are missing
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if [ -z "$AWS_ACCESS_KEY_ID" ]; then
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echo "Missing AWS credentials -- Skipping test"
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exit 0
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fi
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#
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# run normal mode
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#
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$NXF_RUN -c .config --outdir "$OUTDIR" | tee .stdout
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[[ $(grep INFO .nextflow.log | grep -c 'Submitted process') == 1 ]] || false
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[[ $(check_kms_key) == 1 ]] || false
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#
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# run resume mode
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#
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$NXF_RUN -c .config --outdir "$OUTDIR" -resume | tee .stdout
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[[ $(grep INFO .nextflow.log | grep -c 'Cached process') == 1 ]] || false
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[[ $(check_kms_key) == 1 ]] || false
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