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2026-04-29 23:01:54 +02:00

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set -e
set +e
echo ''
$NXF_CMD -q run $NXF_SCRIPT -c .config > stdout
status=$?
set -e
[ $status -ne 0 ] || false
[[ `< .nextflow.log grep -c 'Submitted process > foo'` == 3 ]] || false
[[ `< .nextflow.log grep -c 'Submitted process > bar'` == 1 ]] || false
[[ `< .nextflow.log grep -c 'Error is ignored'` == 1 ]] || false