Update nextflow.config
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@@ -1,11 +1,17 @@
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nextflow {
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plugins {
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plugins {
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id 'nf-k8s'
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registry = 'https://recreational.tech/plugins/'
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}
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}
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plugins {
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id 'k8s-dvfs@0.1.0'
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}
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}
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workDir = '/workspace'
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workDir = '/workspace'
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process {
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process {
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executor = 'k8s'
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executor = 'k8s-dvfs'
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container = 'ubuntu:22.04'
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container = 'ubuntu:22.04'
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pod = [
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pod = [
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@@ -20,16 +26,21 @@ k8s {
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storageMountPath = '/workspace'
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storageMountPath = '/workspace'
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launchDir = '/workspace/launch'
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launchDir = '/workspace/launch'
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projectDir = '/workspace/projects'
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projectDir = '/workspace/projects'
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cleanup = false
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cleanup = true
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nextflowImage = 'gitea.kleine.eulenhexe.de/kevin/ma/nextflow-dvfs:0.1'
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imagePullPolicy = 'IfNotPresent'
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imagePullPolicy = 'IfNotPresent'
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schedulerInterval = '1m'
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recordTaskRuntimes = true
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schedulingStrategy = 'DVFS'
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runtimeComparisonEpsilon = '10s'
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dvfsSchedulingNumTopRuntimes = 3
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nodeInit {
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nodeInit {
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enabled = false
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enabled = true
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image = 'gitea.kleine.eulenhexe.de/kevin/ma/dvfs-agent:0.1'
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image = 'gitea.kleine.eulenhexe.de/kevin/ma/dvfs-agent:0.2.0'
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command = ['/bin/agent']
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command = ['/usr/local/bin/agent']
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wait = 'Running'
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wait = 'Running'
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cleanup = false
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cleanup = true
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}
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}
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}
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}
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