43 lines
1.1 KiB
Docker
43 lines
1.1 KiB
Docker
FROM pditommaso/dkrbase:1.2
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MAINTAINER Paolo Di Tommaso <paolo.ditommaso@gmail.com>
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RUN apt-get update -y && apt-get install -q -y gnuplot python && apt-get clean
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#
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# Required PERL modules
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#
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RUN cpanm Math::CDF Math::Round && \
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rm -rf /root/.cpanm/work/
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#
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# BLAST
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#
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RUN wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-x64-linux.tar.gz && \
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tar xf ncbi-blast-2.2.29+-x64-linux.tar.gz && \
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mv ncbi-blast-2.2.29+ /opt/ && \
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rm -rf ncbi-blast-2.2.29+-x64-linux.tar.gz && \
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ln -s /opt/ncbi-blast-2.2.29+/ /opt/blast
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#
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# install T-Coffee
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#
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RUN wget -q http://tcoffee.org/Packages/Stable/Version_11.00.8cbe486/linux/T-COFFEE_installer_Version_11.00.8cbe486_linux_x64.tar.gz && \
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tar xf T-COFFEE_installer_Version_11.00.8cbe486_linux_x64.tar.gz -C /opt && \
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mv /opt/T-COFFEE_installer_Version_11.00.8cbe486_linux_x64 /opt/tcoffee && \
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rm -rf /opt/tcoffee/plugins/linux/* && \
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rm T-COFFEE_installer_Version_11.00.8cbe486_linux_x64.tar.gz
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#
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# Add AMPA script to bin folder
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#
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ADD bin/AMPA.pl /usr/local/bin/
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#
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# Configure the env
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#
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ENV PATH="$PATH:/opt/ncbi-blast-2.2.29+/bin:/opt/tcoffee/bin"
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