27 lines
642 B
Plaintext
27 lines
642 B
Plaintext
set -e
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mkdir 'w o r k d i r'
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#
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# run using a workdir containing blanks
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#
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echo ''
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$NXF_RUN -w "$PWD/w o r k d i r" > stdout
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
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#
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# the same using scracth
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#
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echo ''
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$NXF_RUN -w "$PWD/w o r k d i r" -process.scratch true > stdout
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
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#
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# the same using Docker
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#
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# Disabled - See https://github.com/docker/docker/issues/17967
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#echo ''
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#$NXF_RUN $WITH_DOCKER -w "$PWD/w o r k d i r" > stdout
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#[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
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# |