48 lines
1009 B
Plaintext
48 lines
1009 B
Plaintext
#!/usr/bin/env nextflow
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/*
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* Copyright 2013-2024, Seqera Labs
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*
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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process foo {
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debug true
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input:
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path(obj)
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script:
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"""
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cat $obj | head
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"""
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}
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process bar {
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tag "$pair"
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input:
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tuple val(pair), path(obj)
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script:
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"""
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cat $obj | head
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"""
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}
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workflow {
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def s3file = file('s3://rnaseq-nf/data/ggal/transcript.fa')
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def s3glob = channel.fromFilePairs('s3://rnaseq-nf/data/ggal/*_{1,2}.fq')
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foo(s3file)
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bar(s3glob)
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}
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