43 lines
1.2 KiB
Plaintext
43 lines
1.2 KiB
Plaintext
#!/usr/bin/env nextflow
|
|
/*
|
|
* Copyright 2013-2024, Seqera Labs
|
|
*
|
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
|
* you may not use this file except in compliance with the License.
|
|
* You may obtain a copy of the License at
|
|
*
|
|
* http://www.apache.org/licenses/LICENSE-2.0
|
|
*
|
|
* Unless required by applicable law or agreed to in writing, software
|
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
* See the License for the specific language governing permissions and
|
|
* limitations under the License.
|
|
*/
|
|
|
|
// Test single process auto-execution with parameter mapping
|
|
process analyzeData {
|
|
debug true
|
|
|
|
input:
|
|
val sampleId
|
|
path dataFile
|
|
val threads
|
|
|
|
script:
|
|
"""
|
|
echo "Single process execution test"
|
|
echo "Sample ID: ${sampleId}"
|
|
echo "Data file: ${dataFile}"
|
|
echo "Threads: ${threads}"
|
|
|
|
if [ -f "${dataFile}" ]; then
|
|
echo "Processing file with ${threads} threads..."
|
|
wc -l "${dataFile}"
|
|
else
|
|
echo "Warning: File ${dataFile} not found"
|
|
fi
|
|
|
|
echo "Analysis completed for sample ${sampleId}"
|
|
"""
|
|
} |