54 lines
1022 B
Plaintext
54 lines
1022 B
Plaintext
#!/usr/bin/env nextflow
|
|
/*
|
|
* Copyright 2013-2024, Seqera Labs
|
|
*
|
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
|
* you may not use this file except in compliance with the License.
|
|
* You may obtain a copy of the License at
|
|
*
|
|
* http://www.apache.org/licenses/LICENSE-2.0
|
|
*
|
|
* Unless required by applicable law or agreed to in writing, software
|
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
* See the License for the specific language governing permissions and
|
|
* limitations under the License.
|
|
*/
|
|
|
|
process foo {
|
|
debug true
|
|
errorStrategy 'finish'
|
|
input: each x
|
|
output: stdout
|
|
|
|
script:
|
|
if( x != 3 )
|
|
"""
|
|
echo run_$x
|
|
sleep 5
|
|
"""
|
|
else
|
|
"""
|
|
exit 99
|
|
"""
|
|
}
|
|
|
|
process bar {
|
|
input: file 'x'
|
|
|
|
script:
|
|
'''
|
|
cat x
|
|
'''
|
|
}
|
|
|
|
|
|
workflow.onError {
|
|
println "success: $workflow.success"
|
|
println "exitStatus: $workflow.exitStatus"
|
|
}
|
|
|
|
workflow {
|
|
foo([1,2,3]) | bar
|
|
}
|