18 lines
433 B
Plaintext
18 lines
433 B
Plaintext
set -e
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export NXF_PLUGINS_DEFAULT=nf-tower
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# Skip test if Seqera Platform token is missing
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if [[ ! $TOWER_ACCESS_TOKEN ]]; then
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echo "Skip seqera-dataset test since TOWER_ACCESS_TOKEN is not available"
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exit 0
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fi
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#
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# run normal mode
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#
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$NXF_RUN | tee stdout
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > TEST'` == 1 ]] || false
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[[ `grep -c 'patient,sex,status,sample,lane,fastq_1,fastq_2' stdout` == 1 ]] || false
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