33 lines
1.0 KiB
Plaintext
33 lines
1.0 KiB
Plaintext
set -e
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export NXF_PLUGINS_DEFAULT=nf-amazon
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# Skip test if AWS keys are missing
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if [[ ! $AWS_ACCESS_KEY_ID ]]; then
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echo "Skip s3-files test since AWS keys are not available"
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exit 0
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fi
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#
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# run normal mode
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#
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$NXF_RUN | tee stdout
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > bar (gut)'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > bar (liver)'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Submitted process > bar (lung)'` == 1 ]] || false
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cmp stdout .expected || false
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#
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# run resume mode
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#
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$NXF_RUN -resume | tee stdout
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > foo'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > bar (gut)'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > bar (liver)'` == 1 ]] || false
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[[ `grep INFO .nextflow.log | grep -c 'Cached process > bar (lung)'` == 1 ]] || false
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cmp stdout .expected || false
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