20 lines
624 B
Plaintext
20 lines
624 B
Plaintext
set -e
|
|
|
|
#
|
|
# run normal mode
|
|
#
|
|
$NXF_RUN $WITH_DOCKER > stdout
|
|
|
|
[[ `grep INFO .nextflow.log | grep -c 'Submitted process > blast'` == 5 ]] || false
|
|
[[ `grep INFO .nextflow.log | grep -c 'Submitted process > extract'` == 5 ]] || false
|
|
[[ `grep INFO .nextflow.log | grep -c 'Submitted process > align'` == 1 ]] || false
|
|
|
|
#
|
|
# run resume mode
|
|
#
|
|
$NXF_RUN $WITH_DOCKER -resume > stdout
|
|
|
|
[[ `grep INFO .nextflow.log | grep -c 'Cached process > blast'` == 5 ]] || false
|
|
[[ `grep INFO .nextflow.log | grep -c 'Cached process > extract'` == 5 ]] || false
|
|
[[ `grep INFO .nextflow.log | grep -c 'Cached process > align'` == 1 ]] || false
|