49 lines
1.7 KiB
Plaintext
49 lines
1.7 KiB
Plaintext
set -e
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export NXF_ASSETS=$PWD/assets
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cp .config nextflow.config
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#
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# First run test `success` is `true`
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#
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echo ''
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$NXF_RUN -name first > stdout
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > sayHello'` == 5 ]] || false
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[[ `grep -c 'DONE' stdout` == 1 ]] || false
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[[ `grep -c 'command: echo' stdout` == 1 ]] || false
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[[ `grep -c 'revision: null' stdout` == 1 ]] || false
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[[ `grep -c 'repository: null' stdout` == 1 ]] || false
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[[ `grep -c 'success: true' stdout` == 1 ]] || false
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[[ `grep -c 'exitStatus: 0' stdout` == 1 ]] || false
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[[ `grep -c 'runName: first' stdout` == 1 ]] || false
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#
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# Second run test `success` if `false`
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#
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echo ''
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$NXF_RUN -name second --command xxx > stdout || true
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[[ `grep -c 'DONE' stdout` == 1 ]] || false
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[[ `grep -c 'command: xxx' stdout` == 1 ]] || false
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[[ `grep -c 'revision: null' stdout` == 1 ]] || false
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[[ `grep -c 'repository: null' stdout` == 1 ]] || false
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[[ `grep -c 'success: false' stdout` == 1 ]] || false
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[[ `grep -c 'exitStatus: 127' stdout` == 1 ]] || false
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[[ `grep -c 'runName: second' stdout` == 1 ]] || false
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#
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# Third run download the script from Github and test `repository` and `revision` are set
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#
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echo ''
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$NXF_CMD run nextflow-io/hello -name third --command hola > stdout
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > sayHello'` == 4 ]] || false
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[[ `grep -c 'DONE' stdout` == 1 ]] || false
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[[ `grep -c 'command: hola' stdout` == 1 ]] || false
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[[ `grep -c 'revision: master' stdout` == 1 ]] || false
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[[ `grep -c 'repository: https://github.com/nextflow-io/hello' stdout` == 1 ]] || false
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[[ `grep -c 'success: true' stdout` == 1 ]] || false
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[[ `grep -c 'exitStatus: 0' stdout` == 1 ]] || false
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[[ `grep -c 'runName: third' stdout` == 1 ]] || false
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