32 lines
503 B
Plaintext
32 lines
503 B
Plaintext
#!/usr/bin/env nextflow
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params.in = "$baseDir/data/sample.fa"
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/*
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* For each sequence that is sent over the 'seq' channel
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* the below task is executed
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*/
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process ampaTask {
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input:
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path seq
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output:
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path 'result'
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// The BASH script to be executed - for each - sequence
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"""
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AMPA.pl -in=${seq} -noplot -rf=result -df=data
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"""
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}
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workflow {
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Channel.fromPath(params.in) |
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splitFasta(file:true) |
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ampaTask |
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view { it.text }
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}
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