29 lines
807 B
Bash
29 lines
807 B
Bash
set -e
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get_abs_filename() {
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echo "$(cd "$(dirname "$1")" && pwd)/$(basename "$1")"
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}
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export NXF_CMD=${NXF_CMD:-$(get_abs_filename ../launch.sh)}
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echo "Test Wave accessing private container repository"
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(cd wave-tests/example1; bash run.sh)
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echo "Test Wave building a container"
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(cd wave-tests/example2; bash run.sh)
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echo "Test Wave building from Conda package"
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(cd wave-tests/example3; bash run.sh)
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#
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#echo "Test Wave building from Conda lock file"
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#(cd wave-tests/example4; bash run.sh)
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echo "Test Wave running rnaseq-nf with Fusion on local executor"
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(cd wave-tests/example6; bash run.sh)
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echo "Test Wave running rnaseq-nf with Fusion on AWS Batch"
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(cd wave-tests/example6; bash run-aws.sh)
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echo "Test Wave running rnaseq-nf with Fusion on Google Batch"
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(cd wave-tests/example6; bash run-gcp.sh)
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