36 lines
1.1 KiB
Plaintext
36 lines
1.1 KiB
Plaintext
set -e
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#
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# run normal mode
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#
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echo ''
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$NXF_RUN | tee stdout
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo (p1.fa)'` == 1 ]] || false
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo (p2.fa)'` == 1 ]] || false
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[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo (p3.fa)'` == 1 ]] || false
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[[ `< stdout grep -c '>1ycsB'` == 2 ]] || false
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[[ `< stdout grep -c '>1pht'` == 2 ]] || false
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[[ `< stdout grep -c '>1aboA'` == 1 ]] || false
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[[ `< stdout grep -c '>1ihvA'` == 1 ]] || false
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[[ `< stdout grep -c '>1vie'` == 1 ]] || false
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#
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# run resume mode
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#
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echo ''
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$NXF_RUN -resume | tee stdout
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[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo (p1.fa)'` == 1 ]] || false
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[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo (p2.fa)'` == 1 ]] || false
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[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo (p3.fa)'` == 1 ]] || false
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[[ `< stdout grep -c '>1ycsB'` == 2 ]] || false
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[[ `< stdout grep -c '>1pht'` == 2 ]] || false
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[[ `< stdout grep -c '>1aboA'` == 1 ]] || false
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[[ `< stdout grep -c '>1ihvA'` == 1 ]] || false
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[[ `< stdout grep -c '>1vie'` == 1 ]] || false
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