set -e # # run normal mode # echo '' $NXF_RUN | tee stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > hola'` == 12 ]] || false [[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 2 ]] || false grep 'x: 1; y: Ciao; z: alpha' stdout grep 'x: 1; y: Ciao; z: beta' stdout grep 'x: 1; y: Ciao; z: delta' stdout grep 'x: 1; y: Hola; z: alpha' stdout grep 'x: 1; y: Hola; z: beta' stdout grep 'x: 1; y: Hola; z: delta' stdout grep 'x: 2; y: Ciao; z: alpha' stdout grep 'x: 2; y: Ciao; z: beta' stdout grep 'x: 2; y: Ciao; z: delta' stdout grep 'x: 2; y: Hola; z: alpha' stdout grep 'x: 2; y: Hola; z: beta' stdout grep 'x: 2; y: Hola; z: delta' stdout grep -F 'foo [a, b]' stdout grep -F 'foo [c, d]' stdout # # RESUME mode # echo '' $NXF_RUN -resume | tee stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > hola'` == 12 ]] || false [[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo'` == 2 ]] || false grep 'x: 1; y: Ciao; z: alpha' stdout grep 'x: 1; y: Ciao; z: beta' stdout grep 'x: 1; y: Ciao; z: delta' stdout grep 'x: 1; y: Hola; z: alpha' stdout grep 'x: 1; y: Hola; z: beta' stdout grep 'x: 1; y: Hola; z: delta' stdout grep 'x: 2; y: Ciao; z: alpha' stdout grep 'x: 2; y: Ciao; z: beta' stdout grep 'x: 2; y: Ciao; z: delta' stdout grep 'x: 2; y: Hola; z: alpha' stdout grep 'x: 2; y: Hola; z: beta' stdout grep 'x: 2; y: Hola; z: delta' stdout grep -F 'foo [a, b]' stdout grep -F 'foo [c, d]' stdout