#!/bin/bash # # Copyright 2013-2026, Seqera Labs # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # # # setup env for integration tests # TEST_JDK=${TEST_JDK:=11} X_BRANCH=${TRAVIS_BRANCH:-${CIRCLE_BRANCH:-'master'}} X_PULL_REQUEST=${TRAVIS_PULL_REQUEST:-false} ## handle github variables [[ $GITHUB_REF ]] && X_BRANCH=$(echo $GITHUB_REF | awk '{n=split($1,A,"/"); print A[n]}') [[ $GITHUB_EVENT_NAME == pull_request ]] && X_PULL_REQUEST=true export WITH_DOCKER='-with-docker' export NXF_CMD=$PWD/nextflow; export TEST_JDK export TEST_MODE ( $NXF_CMD info cd validation bash -x test.sh )