FROM eclipse-temurin:17-jdk AS build

WORKDIR /opt/nextflow

COPY . /opt/nextflow

RUN  chmod +x ./gradlew ./launch.sh ./nextflow || true
    RUN ./gradlew clean assemble exportClasspath

    RUN mkdir -p /opt/nextflow-runtime/lib \
     && i=0; \
        tr ':' '\n' < /opt/nextflow/.launch.classpath | while read -r path; do \
          if [ -f "$path" ]; then \
            name="$(basename "$path")"; \
            target="/opt/nextflow-runtime/lib/$name"; \
            runtime_path="/opt/nextflow/lib/$name"; \
            if [ -e "$target" ]; then \
              i=$((i+1)); \
              target="/opt/nextflow-runtime/lib/${i}-$name"; \
              runtime_path="/opt/nextflow/lib/${i}-$name"; \
            fi; \
            cp "$path" "$target"; \
            echo "$runtime_path" >> /opt/nextflow-runtime/.launch.classpath.lines; \
          fi; \
        done \
     && paste -sd ':' /opt/nextflow-runtime/.launch.classpath.lines > /opt/nextflow-runtime/.launch.classpath

    RUN mkdir -p /opt/nextflow-runtime/plugins \
     && cp /opt/nextflow/launch.sh /opt/nextflow-runtime/launch.sh \
     && cp /opt/nextflow/nextflow /opt/nextflow-runtime/nextflow \
     && cp -a /opt/nextflow/plugins/nf-k8s /opt/nextflow-runtime/plugins/nf-k8s


FROM eclipse-temurin:17-jre

WORKDIR /opt/nextflow

COPY --from=build /opt/nextflow-runtime /opt/nextflow

RUN chmod +x /opt/nextflow/launch.sh \
 && cp /opt/nextflow/launch.sh /opt/nextflow/nextflow \
 && chmod +x /opt/nextflow/nextflow \
 && echo "nextflow-dvfs-dev-image 0.1" > /opt/nextflow/DEV_IMAGE_MARKER


RUN mkdir -p /opt/nextflow/conf \
 && cat > /opt/nextflow/conf/scm <<'EOF'
providers {
    mygitea {
        platform = 'gitea'
        server = 'https://gitea.kleine.eulenhexe.de'
        endpoint = 'https://gitea.kleine.eulenhexe.de/api/v1'
    }
}
EOF

ENV PATH="/opt/nextflow:${PATH}"
ENV NXF_HOME="/tmp/.nextflow"
ENV NXF_PLUGINS_MODE="dev"
ENV NXF_PLUGINS_DIR="/opt/nextflow/plugins"
ENV NXF_SCM_FILE="/opt/nextflow/conf/scm"

ENTRYPOINT ["/opt/nextflow/launch.sh"]