set -e # # run normal mode # echo '' $NXF_RUN | tee stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 4 ]] || false grep "Result $PWD/cache/omega/result.txt" stdout grep "Result $PWD/cache/delta/result.txt" stdout grep "Result $PWD/cache/alpha/result.txt" stdout grep "Result $PWD/cache/gamma/result.txt" stdout test -f my_alpha.txt test -f my_delta.txt test -f my_gamma.txt test -f my_omega.txt diff my_alpha.txt .expected diff my_delta.txt .expected diff my_gamma.txt .expected diff my_omega.txt .expected rm my_* # # run normal mode -- this time store result are used # echo '' $NXF_RUN | tee stdout [[ `grep 'INFO' .nextflow.log | grep -E -c '\[skipping\] Stored process > foo'` == 4 ]] || false grep "Result $PWD/cache/omega/result.txt" stdout grep "Result $PWD/cache/delta/result.txt" stdout grep "Result $PWD/cache/alpha/result.txt" stdout grep "Result $PWD/cache/gamma/result.txt" stdout test -f my_alpha.txt test -f my_delta.txt test -f my_gamma.txt test -f my_omega.txt diff my_alpha.txt .expected diff my_delta.txt .expected diff my_gamma.txt .expected diff my_omega.txt .expected rm my_* # # run resume mode # echo '' $NXF_RUN -resume | tee stdout [[ `grep 'INFO' .nextflow.log | grep -E -c '\[skipping\] Stored process > foo'` == 4 ]] || false grep "Result $PWD/cache/omega/result.txt" stdout grep "Result $PWD/cache/delta/result.txt" stdout grep "Result $PWD/cache/alpha/result.txt" stdout grep "Result $PWD/cache/gamma/result.txt" stdout test -f my_alpha.txt test -f my_delta.txt test -f my_gamma.txt test -f my_omega.txt diff my_alpha.txt .expected diff my_delta.txt .expected diff my_gamma.txt .expected diff my_omega.txt .expected