#!/usr/bin/env nextflow /* * Copyright 2013-2024, Seqera Labs * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ /* * Verify that variable defined in the configuration file * context can be accessed in the process script * * author Emilio Palumbo */ process foo { debug true script: t = task.ext.out.join(',') """ echo foo ${t} """ } process bar { debug true shell: t = task.ext.out.join(',') ''' echo bar !{t} ''' } workflow { foo() bar() }