set -e

#
# run normal mode
#
echo ''
echo \$ $NXF_RUN
$NXF_RUN | tee stdout

[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > align'` == 6 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > merge'` == 2 ]] || false

[[ `grep -c 'barcode: alpha' stdout` == 1 ]] || false
[[ `grep -c 'barcode: gamma' stdout` == 1 ]] || false
[[ `grep -c 'bam : bam1 bam2 bam3' stdout` == 2 ]] || false
[[ `grep -c 'bai : bai1 bai2 bai3' stdout` == 2 ]] || false
[[ `grep -c 'seq_ids' stdout` == 2 ]] || false


#
# RESUME mode
#
echo ''
echo \$ $NXF_RUN -resume
$NXF_RUN -resume | tee stdout

[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > align'` == 6 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > merge'` == 2 ]] || false

[[ `grep -c 'barcode: alpha' stdout` == 1 ]] || false
[[ `grep -c 'barcode: gamma' stdout` == 1 ]] || false
[[ `grep -c 'bam : bam1 bam2 bam3' stdout` == 2 ]] || false
[[ `grep -c 'bai : bai1 bai2 bai3' stdout` == 2 ]] || false
[[ `grep -c 'seq_ids' stdout` == 2 ]] || false