set -e export NXF_ASSETS=$PWD/assets cp .config nextflow.config # # First run test `success` is `true` # echo '' $NXF_RUN -name first > stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > sayHello'` == 5 ]] || false [[ `grep -c 'DONE' stdout` == 1 ]] || false [[ `grep -c 'command: echo' stdout` == 1 ]] || false [[ `grep -c 'revision: null' stdout` == 1 ]] || false [[ `grep -c 'repository: null' stdout` == 1 ]] || false [[ `grep -c 'success: true' stdout` == 1 ]] || false [[ `grep -c 'exitStatus: 0' stdout` == 1 ]] || false [[ `grep -c 'runName: first' stdout` == 1 ]] || false # # Second run test `success` if `false` # echo '' $NXF_RUN -name second --command xxx > stdout || true [[ `grep -c 'DONE' stdout` == 1 ]] || false [[ `grep -c 'command: xxx' stdout` == 1 ]] || false [[ `grep -c 'revision: null' stdout` == 1 ]] || false [[ `grep -c 'repository: null' stdout` == 1 ]] || false [[ `grep -c 'success: false' stdout` == 1 ]] || false [[ `grep -c 'exitStatus: 127' stdout` == 1 ]] || false [[ `grep -c 'runName: second' stdout` == 1 ]] || false # # Third run download the script from Github and test `repository` and `revision` are set # echo '' $NXF_CMD run nextflow-io/hello -name third --command hola > stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > sayHello'` == 4 ]] || false [[ `grep -c 'DONE' stdout` == 1 ]] || false [[ `grep -c 'command: hola' stdout` == 1 ]] || false [[ `grep -c 'revision: master' stdout` == 1 ]] || false [[ `grep -c 'repository: https://github.com/nextflow-io/hello' stdout` == 1 ]] || false [[ `grep -c 'success: true' stdout` == 1 ]] || false [[ `grep -c 'exitStatus: 0' stdout` == 1 ]] || false [[ `grep -c 'runName: third' stdout` == 1 ]] || false