#!/bin/bash BUCKET="nf-kms-xyz" PREFIX="work/ci-test/publish-s3/$(uuidgen)" OUTDIR="s3://$BUCKET/$PREFIX" function check_kms_key() { aws s3api head-object --bucket "$BUCKET" --key "$PREFIX/HELLO.tsv" | grep -c e5109f93-b42d-4c26-89ee-8b251029a41d } # Skip test if AWS keys are missing if [ -z "$AWS_ACCESS_KEY_ID" ]; then echo "Missing AWS credentials -- Skipping test" exit 0 fi # # run normal mode # $NXF_RUN -c .config --outdir "$OUTDIR" | tee .stdout [[ $(grep INFO .nextflow.log | grep -c 'Submitted process') == 1 ]] || false [[ $(check_kms_key) == 1 ]] || false # # run resume mode # $NXF_RUN -c .config --outdir "$OUTDIR" -resume | tee .stdout [[ $(grep INFO .nextflow.log | grep -c 'Cached process') == 1 ]] || false [[ $(check_kms_key) == 1 ]] || false