set -e # # run normal mode # echo '' $NXF_RUN | tee stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > recurseDir'` == 1 ]] || false grep 'result1: file2.fa' stdout grep 'result1: file3.fa' stdout grep 'result1: file4.fa' stdout grep 'result2: file5.txt' stdout # # run resume mode # echo '' $NXF_RUN -resume | tee stdout [[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > recurseDir'` == 1 ]] || false grep 'result1: file2.fa' stdout grep 'result1: file3.fa' stdout grep 'result1: file4.fa' stdout grep 'result2: file5.txt' stdout