set -e mkdir \[work-dir\] # # run normal mode # $NXF_RUN -w \[work-dir\] | tee stdout [[ `grep INFO .nextflow.log | grep -c 'Submitted process'` == 1 ]] || false [[ `< stdout grep -c -F 'match: file[a-b].txt'` == 1 ]] || false [[ `< stdout grep -c -F 'match: file-*.txt'` == 1 ]] || false [[ `< stdout grep -c -F 'match: file-?.txt'` == 1 ]] || false # # run resume mode # $NXF_RUN -w \[work-dir\] -resume | tee stdout [[ `grep INFO .nextflow.log | grep -c 'Cached process'` == 1 ]] || false [[ `< stdout grep -c -F 'match: file[a-b].txt'` == 1 ]] || false [[ `< stdout grep -c -F 'match: file-*.txt'` == 1 ]] || false [[ `< stdout grep -c -F 'match: file-?.txt'` == 1 ]] || false