top-k
This commit is contained in:
86
k8s-dvfs/README.md
Normal file
86
k8s-dvfs/README.md
Normal file
@@ -0,0 +1,86 @@
|
||||
# k8s-dvfs
|
||||
|
||||
## Summary
|
||||
|
||||
`k8s-dvfs` is a Nextflow plugin scaffolded from the official plugin
|
||||
template. Out of the box it provides:
|
||||
|
||||
- A custom function `sayHello` that can be imported into Nextflow scripts.
|
||||
- A workflow observer that reacts to pipeline lifecycle events (start and
|
||||
completion).
|
||||
|
||||
Replace this section with a description of what your plugin actually does.
|
||||
|
||||
Note: The **Summary**, **Get Started**, **Examples**, and **License** sections are
|
||||
mandatory: they are required by the Nextflow Registry, which uses this
|
||||
file as the plugin description. The **Plugin development** section below is
|
||||
guidance for working on the plugin and can be removed before publishing.
|
||||
|
||||
## Get Started
|
||||
|
||||
Enable the plugin in your pipeline `nextflow.config`:
|
||||
|
||||
```groovy
|
||||
plugins {
|
||||
id 'k8s-dvfs@0.1.0'
|
||||
}
|
||||
```
|
||||
|
||||
Nextflow downloads the plugin from the Nextflow Registry the first time
|
||||
the pipeline runs.
|
||||
|
||||
## Examples
|
||||
|
||||
Import and call the `sayHello` function from a Nextflow script:
|
||||
|
||||
```nextflow
|
||||
include { sayHello } from 'plugin/k8s-dvfs'
|
||||
|
||||
workflow {
|
||||
channel.of('Mundo', 'World').map { target -> sayHello(target) }
|
||||
}
|
||||
```
|
||||
|
||||
The bundled observer prints a message when the pipeline starts and completes,
|
||||
so running any pipeline with the plugin enabled produces:
|
||||
|
||||
```
|
||||
Pipeline is starting! 🚀
|
||||
Pipeline complete! 👋
|
||||
```
|
||||
|
||||
## Plugin development
|
||||
|
||||
This project was created from the [Nextflow plugin template](https://www.nextflow.io/docs/latest/guides/gradle-plugin.html#gradle-plugin-create).
|
||||
|
||||
### Building
|
||||
|
||||
To build the plugin:
|
||||
|
||||
```bash
|
||||
make assemble
|
||||
```
|
||||
|
||||
### Testing with Nextflow
|
||||
|
||||
The plugin can be tested without a local Nextflow installation:
|
||||
|
||||
1. Build and install the plugin to your local Nextflow installation: `make install`
|
||||
2. Run a pipeline with the plugin: `nextflow run hello -plugins k8s-dvfs@0.1.0`
|
||||
|
||||
### Publishing
|
||||
|
||||
Plugins can be published to a central Nextflow registry to make them accessible to the Nextflow community.
|
||||
|
||||
Follow these steps to publish the plugin to the Nextflow Registry:
|
||||
|
||||
1. Create a file named `$HOME/.gradle/gradle.properties`, where `$HOME` is your home directory. Add the following properties:
|
||||
* `npr.apiKey`: Your Nextflow Registry access token.
|
||||
2. Package your plugin and publish it to the registry: `make release`.
|
||||
|
||||
## License
|
||||
|
||||
Apache License 2.0. See the [`COPYING`](COPYING) file for details.
|
||||
|
||||
Note: The above license is given for guidance only; however the Nextflow Registry
|
||||
requires the plugin to include an OSS (open source software) license.
|
||||
Reference in New Issue
Block a user