add nextflow d30e48d

nextflow/validation/wave.sh

@@ -0,0 +1,28 @@
+set -e
+
+get_abs_filename() {
+  echo "$(cd "$(dirname "$1")" && pwd)/$(basename "$1")"
+}
+
+export NXF_CMD=${NXF_CMD:-$(get_abs_filename ../launch.sh)}
+
+echo "Test Wave accessing private container repository"
+(cd wave-tests/example1; bash run.sh)
+
+echo "Test Wave building a container"
+(cd wave-tests/example2; bash run.sh)
+
+echo "Test Wave building from Conda package"
+(cd wave-tests/example3; bash run.sh)
+#
+#echo "Test Wave building from Conda lock file"
+#(cd wave-tests/example4; bash run.sh)
+
+echo "Test Wave running rnaseq-nf with Fusion on local executor"
+(cd wave-tests/example6; bash run.sh)
+
+echo "Test Wave running rnaseq-nf with Fusion on AWS Batch"
+(cd wave-tests/example6; bash run-aws.sh)
+
+echo "Test Wave running rnaseq-nf with Fusion on Google Batch"
+(cd wave-tests/example6; bash run-gcp.sh)