add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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docker {
enabled = true
envWhitelist = 'AWS_ACCESS_KEY_ID,AWS_SECRET_ACCESS_KEY'
}
fusion {
enabled = true
}
wave {
build.template = 'conda/pixi:v1'
}

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$NXF_CMD run \
rnaseq-nf \
-profile batch,s3-data \
-with-wave \
-with-fusion \
-process.scratch false

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$NXF_CMD run \
rnaseq-nf \
-profile google-batch,gs-data \
-with-wave \
-with-fusion \
-process.scratch false

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$NXF_CMD run \
rnaseq-nf \
-with-wave \
-w s3://nextflow-ci/wave