add nextflow d30e48d

nextflow/validation/wave-tests/example1/demo.nf

@@ -0,0 +1,13 @@
+process foo {
+  container 'docker.io/pditommaso/my-secret-container:latest'
+  debug true
+
+  script:
+  """
+  my-secret-script.sh
+  """
+}
+
+workflow { 
+  foo()
+}

nextflow/validation/wave-tests/example1/nextflow.config

@@ -0,0 +1,4 @@
+docker {
+  enabled = true 
+} 
+

nextflow/validation/wave-tests/example1/run.sh

@@ -0,0 +1 @@
+$NXF_CMD run demo.nf -with-wave

nextflow/validation/wave-tests/example2/demo.nf

@@ -0,0 +1,7 @@
+include { hello } from './modules/foo'
+
+workflow {
+  hello()
+}
+
+

nextflow/validation/wave-tests/example2/modules/foo/Dockerfile

@@ -0,0 +1,7 @@
+FROM alpine 
+
+RUN apk update && apk add bash cowsay \
+        --update-cache \
+        --repository https://alpine.global.ssl.fastly.net/alpine/edge/community \
+        --repository https://alpine.global.ssl.fastly.net/alpine/edge/main \
+        --repository https://dl-3.alpinelinux.org/alpine/edge/testing

nextflow/validation/wave-tests/example2/modules/foo/main.nf

@@ -0,0 +1,8 @@
+process hello {
+  debug true
+  script:
+  """
+  cowsay Hello Summit! 
+  """
+}
+

nextflow/validation/wave-tests/example2/nextflow.config

@@ -0,0 +1,5 @@
+docker { 
+  enabled = true
+} 
+
+

nextflow/validation/wave-tests/example2/run.sh

@@ -0,0 +1,2 @@
+$NXF_CMD run demo.nf -with-wave
+

nextflow/validation/wave-tests/example3/demo.nf

@@ -0,0 +1,13 @@
+process cow {
+  debug true
+  conda 'cowpy=1.1.5'
+
+  script:
+  '''
+  echo cowpy 'Hello Spack'
+  '''
+}
+
+workflow {
+  cow()
+}

nextflow/validation/wave-tests/example3/nextflow.config

@@ -0,0 +1,9 @@
+wave {
+  enabled = true
+  strategy = ['conda']
+  build.repository = 'docker.io/pditommaso/wave-tests'
+}
+
+docker {
+  enabled = true
+}

nextflow/validation/wave-tests/example3/run.sh

@@ -0,0 +1,2 @@
+$NXF_CMD run demo.nf -with-wave
+

nextflow/validation/wave-tests/example4/demo.nf

@@ -0,0 +1,13 @@
+process cow {
+  debug true
+  conda 'https://prefix.dev/envs/pditommaso/wave/conda-lock.yml'
+
+  script:
+  '''
+  echo cowpy 'Hello Spack'
+  '''
+}
+
+workflow {
+  cow()
+}

nextflow/validation/wave-tests/example4/run.sh

@@ -0,0 +1,2 @@
+$NXF_CMD run demo.nf -with-wave
+

nextflow/validation/wave-tests/example6/nextflow.config

@@ -0,0 +1,13 @@
+docker {
+  enabled = true
+  envWhitelist = 'AWS_ACCESS_KEY_ID,AWS_SECRET_ACCESS_KEY'
+}
+
+fusion {
+  enabled = true
+}
+
+wave {
+  build.template = 'conda/pixi:v1'
+}
+

nextflow/validation/wave-tests/example6/run-aws.sh

@@ -0,0 +1,7 @@
+$NXF_CMD run \
+    rnaseq-nf \
+    -profile batch,s3-data \
+    -with-wave \
+    -with-fusion \
+    -process.scratch false
+

nextflow/validation/wave-tests/example6/run-gcp.sh

@@ -0,0 +1,7 @@
+$NXF_CMD run \
+    rnaseq-nf \
+    -profile google-batch,gs-data \
+    -with-wave \
+    -with-fusion \
+    -process.scratch false
+

nextflow/validation/wave-tests/example6/run.sh

@@ -0,0 +1,5 @@
+$NXF_CMD run \
+    rnaseq-nf \
+    -with-wave \
+    -w s3://nextflow-ci/wave
+