add nextflow d30e48d

nextflow/validation/test-subdirs.nf

@@ -0,0 +1,63 @@
+workflow {
+  foo | bar
+}
+
+process foo {
+    output:
+    path 'gsfolder/'
+    path 'gsfolder2'
+    path 'gsfolder3'
+    path 'gsfolder4'
+    path 'test5.txt'
+    path 'test6.txt'
+    path 'test7.txt'
+    path 'gsfolder5/sub'
+
+    script:
+    """
+    mkdir -p gsfolder/sub
+    touch gsfolder/test1.txt
+    touch gsfolder/sub/test1.txt
+
+    mkdir gsfolder2
+    touch gsfolder2/test2.txt
+
+    mkdir gsfolder3
+    touch gsfolder3/test3.txt
+
+    mkdir gsfolder4
+    touch gsfolder4/test4.txt
+
+    echo 'Hello 5'>>test5.txt
+    echo 'Hello 6'>>test6.txt
+    echo 'Hello 7'>>test7.txt
+
+    mkdir -p gsfolder5/sub
+    touch gsfolder5/sub/test8.txt
+    """
+}
+
+process bar {
+    input:
+    path test_folder
+    path test_folder2
+    path 'test-folder3'
+    path 'test-folder4/*'
+    path test5
+    path 'this-is-test-6.txt'
+    path 'test7/foo/*'
+    path 'test8/*'
+
+    script:
+    """
+    set -x
+    [[ -f $test_folder/test1.txt ]] || false
+    [[ -f $test_folder/sub/test1.txt ]] || false
+    [[ -f $test_folder2/test2.txt ]] || false
+    [[ -f test-folder3/test3.txt ]] || false
+    [[ -f test-folder4/gsfolder4/test4.txt ]] || false
+    [[ \$(cat $test5) = 'Hello 5' ]] || false
+    [[ \$(cat this-is-test-6.txt) = 'Hello 6' ]] || false
+    [[ \$(cat test7/foo/test7.txt) = 'Hello 7' ]] || false
+    """
+}