add nextflow d30e48d

nextflow/validation/test-complexpaths.nf

@@ -0,0 +1,43 @@
+workflow {
+    foo | mix | collect | bar
+}
+
+process foo {
+  publishDir 'foo'
+  container 'debian:latest'
+  output:
+  file '*.fa'
+  file 'hello.txt'
+  file '*.{zip,html}'
+  file '01_A(R{1,2}).fastq'
+  file 'sample_(1 2).vcf'
+  file '.alpha'
+
+  script:
+  """
+  echo A > hello.txt
+  echo B > sample.zip 
+  echo C > sample.html
+  echo D > 01_A\\(R1\\).fastq
+  echo E > 01_A\\(R2\\).fastq
+  echo F > sample_\\(1\\ 2\\).vcf
+  echo 1 > f1.fa
+  echo 2 > f2.fa
+  echo 3 > f3.fa
+  mkdir .alpha
+  echo "Hello world!" > .alpha/hello.txt
+  """
+}
+
+process bar {
+  debug true
+  container 'debian:latest'
+  input: 
+  file '*'
+
+  script:
+  """
+  cat .alpha/hello.txt
+  [ `cat * | grep -c ''` == 9 ] || false
+  """
+}