add nextflow d30e48d

nextflow/tests-v1/complex-names.nf

@@ -0,0 +1,49 @@
+#!/usr/bin/env nextflow
+
+process foo {
+  publishDir 'foo', mode: 'copy'
+  container 'debian:latest'
+  output:
+  path '*.fa'
+  path 'hello.txt'
+  path '*.{zip,html}'
+  path '01_A(R{1,2}).fastq'
+  path 'sample_(1 2).vcf'
+  path '.alpha'
+
+  script:
+  $/
+  echo A > hello.txt
+  echo B > sample.zip 
+  echo C > sample.html
+  echo D > 01_A\(R1\).fastq
+  echo E > 01_A\(R2\).fastq
+  echo F > sample_\(1\ 2\).vcf
+  echo 1 > f1.fa
+  echo 2 > f2.fa
+  echo 3 > f3.fa
+  mkdir .alpha
+  echo "Hello world!" > .alpha/hello.txt
+  /$
+}
+
+process bar {
+  debug true
+  container 'debian:latest'
+  input: 
+  path '*'
+
+  script:
+  $/
+  cat .alpha/hello.txt
+  [ `cat * | grep -c ''` == 9 ] || false
+  /$
+}
+
+/*
+ * main flow
+ */
+
+workflow {
+    foo | mix | collect | bar
+}