add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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@@ -0,0 +1,27 @@
set -e
mkdir 'w o r k d i r'
#
# run using a workdir containing blanks
#
echo ''
$NXF_RUN -w "$PWD/w o r k d i r" > stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
#
# the same using scracth
#
echo ''
$NXF_RUN -w "$PWD/w o r k d i r" -process.scratch true > stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
#
# the same using Docker
#
# Disabled - See https://github.com/docker/docker/issues/17967
#echo ''
#$NXF_RUN $WITH_DOCKER -w "$PWD/w o r k d i r" > stdout
#[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 3 ]] || false
#