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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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37
nextflow/tests-v1/checks/shell-script.nf/.checks Normal file
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#
# run normal mode
#
$NXF_RUN | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Submitted process'` == 2 ]] || false
< stdout grep "Home: $HOME - Input: alpha zzz" || false
< stdout grep "Home: $HOME - Input: omega zzz" || false
#
# run resume mode
#
$NXF_RUN -resume | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Cached process'` == 2 ]] || false
< stdout grep "Home: $HOME - Input: alpha zzz" || false
< stdout grep "Home: $HOME - Input: omega zzz" || false
#
# run changing params does not hit cache
#
$NXF_RUN -resume --data xxx | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Submitted process'` == 2 ]] || false
< stdout grep "Home: $HOME - Input: alpha xxx" || false
< stdout grep "Home: $HOME - Input: omega xxx" || false
#
# now cache is ok
#
$NXF_RUN -resume --data xxx | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Cached process'` == 2 ]] || false
< stdout grep "Home: $HOME - Input: alpha xxx" || false
< stdout grep "Home: $HOME - Input: omega xxx" || false