add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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@@ -0,0 +1,18 @@
set -e
# enable amazon plugin
export NXF_PLUGINS_DEFAULT=nf-amazon
# this test needs to validate the ability to access S3 public data
# in anonymous manner, therefore make sure to clear any aws credentials
unset AWS_ACCESS_KEY_ID
unset AWS_SECRET_ACCESS_KEY
unset AWS_SECRET_KEY
unset AWS_ACCESS_KEY
#
# run normal mode
#
$NXF_RUN | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Submitted process > foo'` == 1 ]] || false