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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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30
nextflow/tests-v1/checks/publish-s3-kms.nf/.checks Normal file
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#!/bin/bash
BUCKET="nf-kms-xyz"
PREFIX="work/ci-test/publish-s3/$(uuidgen)"
OUTDIR="s3://$BUCKET/$PREFIX"
function check_kms_key() {
aws s3api head-object --bucket "$BUCKET" --key "$PREFIX/HELLO.tsv" | grep -c e5109f93-b42d-4c26-89ee-8b251029a41d
}
# Skip test if AWS keys are missing
if [ -z "$AWS_ACCESS_KEY_ID" ]; then
echo "Missing AWS credentials -- Skipping test"
exit 0
fi
#
# run normal mode
#
$NXF_RUN -c .config --outdir "$OUTDIR" | tee .stdout
[[ $(grep INFO .nextflow.log | grep -c 'Submitted process') == 1 ]] || false
[[ $(check_kms_key) == 1 ]] || false
#
# run resume mode
#
$NXF_RUN -c .config --outdir "$OUTDIR" -resume | tee .stdout
[[ $(grep INFO .nextflow.log | grep -c 'Cached process') == 1 ]] || false
[[ $(check_kms_key) == 1 ]] || false

2
nextflow/tests-v1/checks/publish-s3-kms.nf/.config Normal file
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aws.client.storageEncryption = 'aws:kms'
aws.client.storageKmsKeyId = 'arn:aws:kms:eu-west-1:195996028523:key/e5109f93-b42d-4c26-89ee-8b251029a41d'