add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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@@ -0,0 +1,28 @@
set -e
#
# run normal mode
#
echo ''
$NXF_RUN | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > foo'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > bar'` == 1 ]] || false
[[ `< stdout grep -E 'foo.*/a/a/2\.txt' ` ]] || false
[[ `< stdout grep -E 'bar.*/a/a/2\.txt' ` ]] || false
#
# RESUME mode
#
echo ''
$NXF_RUN -resume | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > foo'` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > bar'` == 1 ]] || false
[[ `< stdout grep -E 'foo.*/a/a/2\.txt' ` ]] || false
[[ `< stdout grep -E 'bar.*/a/a/2\.txt' ` ]] || false