add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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@@ -0,0 +1,27 @@
#!/bin/bash
# Skip test if AWS keys are missing
if [ -z "$AWS_ACCESS_KEY_ID" ]; then
echo "Missing AWS credentials -- Skipping test"
exit 0
fi
OUTDIR="s3://nextflow-ci/work/ci-test/fusion-symlink/$(uuidgen)"
#
# normal run
#
echo initial run
$NXF_RUN -c .config --outdir "$OUTDIR"
$NXF_CMD fs cp "$OUTDIR/data.txt" data.txt
cmp data.txt .expected || false
#
# resume run
#
echo resumed run
$NXF_RUN -c .config --outdir "$OUTDIR" -resume
$NXF_CMD fs cp "$OUTDIR/data.txt" data.txt
cmp data.txt .expected || false