add nextflow d30e48d

nextflow/tests/s3-files.nf

@@ -0,0 +1,47 @@
+#!/usr/bin/env nextflow
+/*
+ * Copyright 2013-2024, Seqera Labs
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+
+process foo {
+  debug true
+  input:
+  path(obj)
+
+  script:
+  """
+  cat $obj | head
+  """
+}
+
+process bar {
+  tag "$pair"
+  input:
+  tuple val(pair), path(obj)
+
+  script:
+  """
+  cat $obj | head
+  """
+}
+
+workflow {
+  def s3file = file('s3://rnaseq-nf/data/ggal/transcript.fa')
+  def s3glob = channel.fromFilePairs('s3://rnaseq-nf/data/ggal/*_{1,2}.fq')
+
+  foo(s3file)
+  bar(s3glob)
+}