add nextflow d30e48d

nextflow/tests/race.nf

@@ -0,0 +1,147 @@
+#!/usr/bin/env nextflow
+/*
+ * Copyright 2013-2024, Seqera Labs
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+workflow {
+  seqs = channel.fromList(file("$baseDir/data/seqs/*.fastq"))
+  seqs | proc1
+  seqs | proc2
+  seqs | proc3
+  seqs | proc4
+  seqs | proc5
+  seqs | proc6
+  seqs | proc7
+}
+
+process proc1 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName) 
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc1'
+  """
+  echo "blarg" > $outName
+  """
+}
+
+process proc2 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName)
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc2'
+  """
+  echo "blarg" > $outName
+  """
+}
+
+process proc3 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName)
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc3'
+  """
+  echo "blarg" > $outName
+  """
+}
+
+process proc4 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName)
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc4'
+  """
+  echo "blarg" > $outName
+  """
+}
+
+
+process proc5 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName)
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc5'
+  """
+  echo "blarg" > $outName
+  """
+}
+
+process proc6 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName)
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc6'
+  """
+  echo "blarg" > $outName
+  """
+}
+
+process proc7 {
+  storeDir 'results'
+
+  input:
+  file fastq
+
+  output:
+  tuple val(baseName), file(outName)
+
+  script:
+  baseName = fastq.baseName
+  outName = baseName + '.proc7'
+  """
+  echo "blarg" > $outName
+  """
+}