add nextflow d30e48d

This commit is contained in:
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions

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#!/usr/bin/env nextflow
/*
* Copyright 2013-2024, Seqera Labs
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
nextflow.enable.types = true
params {
input: Path
prefix: String = 'my'
names: List<String> = ['alpha', 'delta', 'gamma', 'omega']
}
process foo {
stageInMode 'copy'
input:
tuple(name: String, txt: Path)
prefix: String
stage:
stageAs txt, "${prefix}_${name}.txt"
output:
file("${prefix}_${name}.txt")
script:
"""
echo World >> ${prefix}_${name}.txt
"""
}
workflow {
ch_names = channel.fromList(params.names)
ch_inputs = ch_names.combine( channel.of(params.input) )
ch_foo = foo( ch_inputs, params.prefix )
ch_foo.subscribe { it ->
println "~ Saving ${it.name}"
it.copyTo('.')
}
}