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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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36
nextflow/tests/checks/subworkflow.nf/.checks Normal file
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set -e
rm * || true
$NXF_RUN | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'process > test1:flow1:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test1:flow1:bar'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test1:flow2:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test1:flow2:baz'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test2:flow1:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test2:flow1:bar'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test2:flow2:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'process > test2:flow2:baz'` == 1 ]] || false
[[ `<test1.txt grep -c 'HELLO'` == 1 ]]
[[ `<test1.txt grep -c 'olleH'` == 1 ]]
[[ `<test2.txt grep -c 'HELLO'` == 1 ]]
[[ `<test2.txt grep -c 'olleH'` == 1 ]]
rm * || true
$NXF_RUN -resume | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test1:flow1:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test1:flow1:bar'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test1:flow2:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test1:flow2:baz'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test2:flow1:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test2:flow1:bar'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test2:flow2:foo'` == 1 ]] || false
[[ `grep INFO .nextflow.log | grep -c 'Cached process > test2:flow2:baz'` == 1 ]] || false
[[ `<test1.txt grep -c 'HELLO'` == 1 ]]
[[ `<test1.txt grep -c 'olleH'` == 1 ]]
[[ `<test2.txt grep -c 'HELLO'` == 1 ]]
[[ `<test2.txt grep -c 'olleH'` == 1 ]]