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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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27
nextflow/tests/checks/subdirs.nf/.checks Normal file
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@@ -0,0 +1,27 @@
set -e
#
# run normal mode
#
$NXF_RUN | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Submitted process'` == 1 ]] || false
< stdout grep 'link_1.fasta'
< stdout grep 'link_2.fasta'
< stdout grep 'link_3.fasta'
< stdout grep 'alpha.txt'
< stdout grep 'beta.txt'
#
# run resume mode
#
$NXF_RUN -resume | tee stdout
[[ `grep INFO .nextflow.log | grep -c 'Cached process'` == 1 ]] || false
< stdout grep 'link_1.fasta'
< stdout grep 'link_2.fasta'
< stdout grep 'link_3.fasta'
< stdout grep 'alpha.txt'
< stdout grep 'beta.txt'