add nextflow d30e48d

nextflow/tests/checks/seqera-dataset.nf/.checks

@@ -0,0 +1,17 @@
+set -e
+export NXF_PLUGINS_DEFAULT=nf-tower
+
+# Skip test if Seqera Platform token is missing
+if [[ ! $TOWER_ACCESS_TOKEN ]]; then
+  echo "Skip seqera-dataset test since TOWER_ACCESS_TOKEN is not available"
+  exit 0
+fi
+
+#
+# run normal mode
+#
+$NXF_RUN | tee stdout
+
+[[ `grep INFO .nextflow.log | grep -c 'Submitted process > TEST'` == 1 ]] || false
+[[ `grep -c 'patient,sex,status,sample,lane,fastq_1,fastq_2' stdout` == 1 ]] || false
+