add nextflow d30e48d

nextflow/tests/checks/profiles.nf/.checks

@@ -0,0 +1,43 @@
+#
+# verify default profile
+#
+$NXF_CMD -C ../../profiles.config config | tee stdout
+cmp stdout .expected_profile_standard.txt || false
+
+#
+# verify advanced profile
+#
+$NXF_CMD -C ../../profiles.config config -profile advanced | tee stdout
+cmp stdout .expected_profile_advanced.txt || false
+
+#
+# verify *all* profile
+#
+$NXF_CMD -C ../../profiles.config config -a | tee stdout
+cmp stdout .expected_profile_all.txt || false
+
+#
+# verify return error
+#
+$NXF_CMD -C ../../profiles.config config -profile xxx 2>&1| tee stdout
+[[ ${PIPESTATUS[0]} == 0 ]] && exit 1
+< stdout grep "Unknown configuration profile: 'xxx'" || false
+
+#
+# Verify run uses the default profile
+#
+$NXF_CMD -C ../../profiles.config run $NXF_SCRIPT | tee stdout
+< stdout grep "cpus: 2 memory: 2 GB" || false
+
+#
+# Verify run uses the *advanced* profile
+#
+$NXF_CMD -C ../../profiles.config run $NXF_SCRIPT -profile advanced | tee stdout
+< stdout grep "cpus: 8 memory: 10 GB" || false
+
+#
+# Verify that return an error code
+#
+$NXF_CMD -C ../../profiles.config run $NXF_SCRIPT -profile foo 2>&1| tee stdout
+[[ ${PIPESTATUS[0]} == 0 ]] && exit 1
+< stdout grep "Unknown configuration profile: 'foo'" || false

nextflow/tests/checks/profiles.nf/.expected_profile_advanced.txt

@@ -0,0 +1,7 @@
+outputDir = 'results'
+
+process {
+   cpus = 8
+   memory = '10GB'
+   disk = '300GB'
+}

nextflow/tests/checks/profiles.nf/.expected_profile_all.txt

@@ -0,0 +1,17 @@
+outputDir = 'results'
+
+profiles {
+   standard {
+      process {
+         cpus = 2
+         memory = '2GB'
+      }
+   }
+   advanced {
+      process {
+         cpus = 8
+         memory = '10GB'
+         disk = '300GB'
+      }
+   }
+}

nextflow/tests/checks/profiles.nf/.expected_profile_standard.txt

@@ -0,0 +1,6 @@
+outputDir = 'results'
+
+process {
+   cpus = 2
+   memory = '2GB'
+}