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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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14
nextflow/tests/checks/plugin-registry.nf/.checks Normal file
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@@ -0,0 +1,14 @@
set -e
#
# run normal mode
#
echo ''
NXF_PLUGINS_REGISTRY_URL=https://plugin-registry.dev-tower.net/api NXF_PLUGINS_DIR=$PWD/.nextflow/plugins/ $NXF_RUN -plugins nf-ci-integration-test@0.1.0 | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Downloading plugin nf-ci-integration-test@0.1.0'` == 1 ]] || false
[[ `grep -c 'Pipeline is starting using nf-ci-test-integration plugin' stdout` == 1 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > sayhello'` == 1 ]] || false
[[ `grep -c 'Hello world!' stdout` == 1 ]] || false
[[ `grep -c 'Pipeline completed using nf-ci-test-integration plugin' stdout` == 1 ]] || false