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add nextflow d30e48d

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Kevin
2026-04-29 23:01:54 +02:00
parent d0b12d668d
commit 97cc9058d3
2840 changed files with 730250 additions and 0 deletions
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23
nextflow/tests/checks/error.nf/.checks Normal file
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set -e
#
# run normal mode
#
$NXF_RUN -c .config | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > task1'` == 3 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > task2'` == 3 ]] || false
[[ `grep 'NOTE' .nextflow.log | grep -E -c "Process .* terminated with an error exit status"` == 3 ]] || false
#
# RESUME mode
#
echo ''
$NXF_RUN -c .config -resume | tee stdout
[[ `grep 'INFO' .nextflow.log | grep -c 'Submitted process > task1'` == 3 ]] || false
[[ `grep 'INFO' .nextflow.log | grep -c 'Cached process > task2'` == 3 ]] || false
[[ `grep 'NOTE' .nextflow.log | grep -E -c "Process .* terminated with an error exit status"` == 3 ]] || false

1
nextflow/tests/checks/error.nf/.config Normal file
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process.errorStrategy = { task.exitStatus >= 1 ? 'retry' : 'ignore' }